CRAN Package Check Results for Package simstudy

Last updated on 2024-07-27 05:49:50 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.8.0	26.49	340.45	366.94	ERROR
r-devel-linux-x86_64-debian-gcc	0.8.0				ERROR
r-devel-linux-x86_64-fedora-clang	0.8.0			477.58	ERROR
r-devel-linux-x86_64-fedora-gcc	0.8.0			497.64	OK
r-devel-windows-x86_64	0.8.0	23.00	296.00	319.00	OK
r-patched-linux-x86_64	0.8.0				ERROR
r-release-linux-x86_64	0.8.0	24.46	336.36	360.82	OK
r-release-macos-arm64	0.8.0			139.00	OK
r-release-macos-x86_64	0.8.0			193.00	OK
r-release-windows-x86_64	0.8.0	27.00	293.00	320.00	OK
r-oldrel-macos-arm64	0.8.0			137.00	OK
r-oldrel-macos-x86_64	0.8.0			345.00	OK
r-oldrel-windows-x86_64	0.8.0	29.00	354.00	383.00	ERROR

Check Details

Version: 0.8.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘clustered.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/clustered_files/figure-html/unnamed-chunk-5-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12034 bytes Input file size = 12124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9797 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9797 Output IDAT size = 9797 bytes (2237 bytes decrease) Output file size = 9875 bytes (2249 bytes = 18.55% decrease) --- finished re-building ‘clustered.Rmd’ --- re-building ‘corelationmat.Rmd’ using rmarkdown --- finished re-building ‘corelationmat.Rmd’ --- re-building ‘correlated.Rmd’ using rmarkdown --- finished re-building ‘correlated.Rmd’ --- re-building ‘customdist.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/customdist_files/figure-html/unnamed-chunk-6-1.png 576x288 pixels, 8 bits/pixel, 213 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3108 bytes Input file size = 3837 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2732 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2728 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2728 Output IDAT size = 2728 bytes (380 bytes decrease) Output file size = 2806 bytes (1031 bytes = 26.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/customdist_files/figure-html/unnamed-chunk-11-1.png 768x576 pixels, 8 bits/pixel, 244 colors in palette Input IDAT size = 13068 bytes Input file size = 13902 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11259 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11259 Output IDAT size = 11259 bytes (1809 bytes decrease) Output file size = 12081 bytes (1821 bytes = 13.10% decrease) --- finished re-building ‘customdist.Rmd’ --- re-building ‘double_dot_extension.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/double_dot_extension_files/figure-html/unnamed-chunk-9-1.png 480x288 pixels, 8 bits/pixel, 222 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9977 bytes Input file size = 10745 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9034 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8739 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8739 Output IDAT size = 8739 bytes (1238 bytes decrease) Output file size = 8817 bytes (1928 bytes = 17.94% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/double_dot_extension_files/figure-html/unnamed-chunk-18-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26581 bytes Input file size = 26695 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20943 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20943 Output IDAT size = 20943 bytes (5638 bytes decrease) Output file size = 21021 bytes (5674 bytes = 21.25% decrease) --- finished re-building ‘double_dot_extension.Rmd’ --- re-building ‘logisticCoefs.Rmd’ using rmarkdown --- finished re-building ‘logisticCoefs.Rmd’ --- re-building ‘longitudinal.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/longitudinal_files/figure-html/unnamed-chunk-4-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49877 bytes Input file size = 50027 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41716 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41716 Output IDAT size = 41716 bytes (8161 bytes decrease) Output file size = 41794 bytes (8233 bytes = 16.46% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/longitudinal_files/figure-html/unnamed-chunk-8-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21624 bytes Input file size = 21726 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17073 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17073 Output IDAT size = 17073 bytes (4551 bytes decrease) Output file size = 17151 bytes (4575 bytes = 21.06% decrease) --- finished re-building ‘longitudinal.Rmd’ --- re-building ‘missing.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/missing_files/figure-html/unnamed-chunk-10-1.png 672x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18611 bytes Input file size = 18713 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14756 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14756 Output IDAT size = 14756 bytes (3855 bytes decrease) Output file size = 14834 bytes (3879 bytes = 20.73% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/missing_files/figure-html/unnamed-chunk-12-1.png 672x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18829 bytes Input file size = 18931 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15060 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15060 Output IDAT size = 15060 bytes (3769 bytes decrease) Output file size = 15138 bytes (3793 bytes = 20.04% decrease) --- finished re-building ‘missing.Rmd’ --- re-building ‘ordinal.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/threshold-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18302 bytes Input file size = 18404 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14483 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14483 Output IDAT size = 14483 bytes (3819 bytes decrease) Output file size = 14561 bytes (3843 bytes = 20.88% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/plotB-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12816 bytes Input file size = 12906 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10162 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10162 Output IDAT size = 10162 bytes (2654 bytes decrease) Output file size = 10240 bytes (2666 bytes = 20.66% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/unnamed-chunk-5-1.png 576x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19365 bytes Input file size = 19467 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15496 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15496 Output IDAT size = 15496 bytes (3869 bytes decrease) Output file size = 15574 bytes (3893 bytes = 20.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/plotNP-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13018 bytes Input file size = 13108 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10319 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10319 Output IDAT size = 10319 bytes (2699 bytes decrease) Output file size = 10397 bytes (2711 bytes = 20.68% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/unnamed-chunk-10-1.png 576x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19668 bytes Input file size = 19770 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15618 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15618 Output IDAT size = 15618 bytes (4050 bytes decrease) Output file size = 15696 bytes (4074 bytes = 20.61% decrease) --- finished re-building ‘ordinal.Rmd’ --- re-building ‘simstudy.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/simstudy_files/figure-html/unnamed-chunk-16-1.png 480x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19147 bytes Input file size = 19249 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13915 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13915 Output IDAT size = 13915 bytes (5232 bytes decrease) Output file size = 13993 bytes (5256 bytes = 27.31% decrease) --- finished re-building ‘simstudy.Rmd’ --- re-building ‘spline.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-2-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33343 bytes Input file size = 33469 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24870 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24870 Output IDAT size = 24870 bytes (8473 bytes decrease) Output file size = 24948 bytes (8521 bytes = 25.46% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-2-2.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37549 bytes Input file size = 37675 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28859 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28859 Output IDAT size = 28859 bytes (8690 bytes decrease) Output file size = 28937 bytes (8738 bytes = 23.19% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-3-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15006 bytes Input file size = 15096 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11448 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11448 Output IDAT size = 11448 bytes (3558 bytes decrease) Output file size = 11526 bytes (3570 bytes = 23.65% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-3-2.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27699 bytes Input file size = 27813 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20321 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20321 Output IDAT size = 20321 bytes (7378 bytes decrease) Output file size = 20399 bytes (7414 bytes = 26.66% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-5-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13444 bytes Input file size = 13534 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10644 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10644 Output IDAT size = 10644 bytes (2800 bytes decrease) Output file size = 10722 bytes (2812 bytes = 20.78% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-7-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46614 bytes Input file size = 46752 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31843 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31843 Output IDAT size = 31843 bytes (14771 bytes decrease) Output file size = 31921 bytes (14831 bytes = 31.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-8-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 50757 bytes Input file size = 50907 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35631 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35631 Output IDAT size = 35631 bytes (15126 bytes decrease) Output file size = 35709 bytes (15198 bytes = 29.85% decrease) --- finished re-building ‘spline.Rmd’ --- re-building ‘survival.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/survival_files/figure-html/unnamed-chunk-6-1.png 624x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23921 bytes Input file size = 24023 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18798 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18798 Output IDAT size = 18798 bytes (5123 bytes decrease) Output file size = 18876 bytes (5147 bytes = 21.43% decrease) Quitting from lines 164-165 [unnamed-chunk-8] (survival.Rmd) Error: processing vignette 'survival.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘survival.Rmd’ --- re-building ‘treat_and_exposure.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-6-1.png 384x576 pixels, 8 bits/pixel, 245 colors in palette Input IDAT size = 9746 bytes Input file size = 10583 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8768 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8768 Output IDAT size = 8768 bytes (978 bytes decrease) Output file size = 9593 bytes (990 bytes = 9.35% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-10-1.png 624x240 pixels, 8 bits/pixel, 250 colors in palette Input IDAT size = 4660 bytes Input file size = 5500 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4201 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4186 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4186 Output IDAT size = 4186 bytes (474 bytes decrease) Output file size = 5026 bytes (474 bytes = 8.62% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-12-1.png 624x240 pixels, 8 bits/pixel, 250 colors in palette Input IDAT size = 4714 bytes Input file size = 5554 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4263 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4251 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4251 Output IDAT size = 4251 bytes (463 bytes decrease) Output file size = 5091 bytes (463 bytes = 8.34% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-15-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29336 bytes Input file size = 29450 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22381 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22381 Output IDAT size = 22381 bytes (6955 bytes decrease) Output file size = 22459 bytes (6991 bytes = 23.74% decrease) --- finished re-building ‘treat_and_exposure.Rmd’ SUMMARY: processing the following file failed: ‘survival.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.8.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘clustered.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/clustered_files/figure-html/unnamed-chunk-5-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12034 bytes Input file size = 12124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9797 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9797 Output IDAT size = 9797 bytes (2237 bytes decrease) Output file size = 9875 bytes (2249 bytes = 18.55% decrease) --- finished re-building ‘clustered.Rmd’ --- re-building ‘corelationmat.Rmd’ using rmarkdown --- finished re-building ‘corelationmat.Rmd’ --- re-building ‘correlated.Rmd’ using rmarkdown --- finished re-building ‘correlated.Rmd’ --- re-building ‘customdist.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/customdist_files/figure-html/unnamed-chunk-6-1.png 576x288 pixels, 8 bits/pixel, 213 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3108 bytes Input file size = 3837 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2732 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2728 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2728 Output IDAT size = 2728 bytes (380 bytes decrease) Output file size = 2806 bytes (1031 bytes = 26.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/customdist_files/figure-html/unnamed-chunk-11-1.png 768x576 pixels, 8 bits/pixel, 244 colors in palette Input IDAT size = 13068 bytes Input file size = 13902 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11259 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11259 Output IDAT size = 11259 bytes (1809 bytes decrease) Output file size = 12081 bytes (1821 bytes = 13.10% decrease) --- finished re-building ‘customdist.Rmd’ --- re-building ‘double_dot_extension.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/double_dot_extension_files/figure-html/unnamed-chunk-9-1.png 480x288 pixels, 8 bits/pixel, 222 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9977 bytes Input file size = 10745 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9034 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8739 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8739 Output IDAT size = 8739 bytes (1238 bytes decrease) Output file size = 8817 bytes (1928 bytes = 17.94% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/double_dot_extension_files/figure-html/unnamed-chunk-18-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26581 bytes Input file size = 26695 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20943 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20943 Output IDAT size = 20943 bytes (5638 bytes decrease) Output file size = 21021 bytes (5674 bytes = 21.25% decrease) --- finished re-building ‘double_dot_extension.Rmd’ --- re-building ‘logisticCoefs.Rmd’ using rmarkdown --- finished re-building ‘logisticCoefs.Rmd’ --- re-building ‘longitudinal.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/longitudinal_files/figure-html/unnamed-chunk-4-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49877 bytes Input file size = 50027 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41716 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41716 Output IDAT size = 41716 bytes (8161 bytes decrease) Output file size = 41794 bytes (8233 bytes = 16.46% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/longitudinal_files/figure-html/unnamed-chunk-8-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21624 bytes Input file size = 21726 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17073 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17073 Output IDAT size = 17073 bytes (4551 bytes decrease) Output file size = 17151 bytes (4575 bytes = 21.06% decrease) --- finished re-building ‘longitudinal.Rmd’ --- re-building ‘missing.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/missing_files/figure-html/unnamed-chunk-10-1.png 672x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18611 bytes Input file size = 18713 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14756 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14756 Output IDAT size = 14756 bytes (3855 bytes decrease) Output file size = 14834 bytes (3879 bytes = 20.73% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/missing_files/figure-html/unnamed-chunk-12-1.png 672x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18829 bytes Input file size = 18931 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15060 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15060 Output IDAT size = 15060 bytes (3769 bytes decrease) Output file size = 15138 bytes (3793 bytes = 20.04% decrease) --- finished re-building ‘missing.Rmd’ --- re-building ‘ordinal.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/threshold-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18302 bytes Input file size = 18404 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14483 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14483 Output IDAT size = 14483 bytes (3819 bytes decrease) Output file size = 14561 bytes (3843 bytes = 20.88% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/plotB-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12816 bytes Input file size = 12906 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10162 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10162 Output IDAT size = 10162 bytes (2654 bytes decrease) Output file size = 10240 bytes (2666 bytes = 20.66% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/unnamed-chunk-5-1.png 576x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19365 bytes Input file size = 19467 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15496 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15496 Output IDAT size = 15496 bytes (3869 bytes decrease) Output file size = 15574 bytes (3893 bytes = 20.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/plotNP-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13018 bytes Input file size = 13108 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10319 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10319 Output IDAT size = 10319 bytes (2699 bytes decrease) Output file size = 10397 bytes (2711 bytes = 20.68% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/unnamed-chunk-10-1.png 576x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19668 bytes Input file size = 19770 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15618 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15618 Output IDAT size = 15618 bytes (4050 bytes decrease) Output file size = 15696 bytes (4074 bytes = 20.61% decrease) --- finished re-building ‘ordinal.Rmd’ --- re-building ‘simstudy.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/simstudy_files/figure-html/unnamed-chunk-16-1.png 480x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19147 bytes Input file size = 19249 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13915 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13915 Output IDAT size = 13915 bytes (5232 bytes decrease) Output file size = 13993 bytes (5256 bytes = 27.31% decrease) --- finished re-building ‘simstudy.Rmd’ --- re-building ‘spline.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-2-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33343 bytes Input file size = 33469 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24870 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24870 Output IDAT size = 24870 bytes (8473 bytes decrease) Output file size = 24948 bytes (8521 bytes = 25.46% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-2-2.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37549 bytes Input file size = 37675 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28859 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28859 Output IDAT size = 28859 bytes (8690 bytes decrease) Output file size = 28937 bytes (8738 bytes = 23.19% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-3-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15006 bytes Input file size = 15096 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11448 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11448 Output IDAT size = 11448 bytes (3558 bytes decrease) Output file size = 11526 bytes (3570 bytes = 23.65% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-3-2.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27699 bytes Input file size = 27813 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20321 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20321 Output IDAT size = 20321 bytes (7378 bytes decrease) Output file size = 20399 bytes (7414 bytes = 26.66% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-5-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13444 bytes Input file size = 13534 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10644 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10644 Output IDAT size = 10644 bytes (2800 bytes decrease) Output file size = 10722 bytes (2812 bytes = 20.78% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-7-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46614 bytes Input file size = 46752 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31843 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31843 Output IDAT size = 31843 bytes (14771 bytes decrease) Output file size = 31921 bytes (14831 bytes = 31.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-8-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 50757 bytes Input file size = 50907 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35631 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35631 Output IDAT size = 35631 bytes (15126 bytes decrease) Output file size = 35709 bytes (15198 bytes = 29.85% decrease) --- finished re-building ‘spline.Rmd’ --- re-building ‘survival.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/survival_files/figure-html/unnamed-chunk-6-1.png 624x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23921 bytes Input file size = 24023 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18798 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18798 Output IDAT size = 18798 bytes (5123 bytes decrease) Output file size = 18876 bytes (5147 bytes = 21.43% decrease) Quitting from lines 164-165 [unnamed-chunk-8] (survival.Rmd) Error: processing vignette 'survival.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘survival.Rmd’ --- re-building ‘treat_and_exposure.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-6-1.png 384x576 pixels, 8 bits/pixel, 245 colors in palette Input IDAT size = 9789 bytes Input file size = 10626 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8773 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8773 Output IDAT size = 8773 bytes (1016 bytes decrease) Output file size = 9598 bytes (1028 bytes = 9.67% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-10-1.png 624x240 pixels, 8 bits/pixel, 250 colors in palette Input IDAT size = 4705 bytes Input file size = 5545 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4262 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4249 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4249 Output IDAT size = 4249 bytes (456 bytes decrease) Output file size = 5089 bytes (456 bytes = 8.22% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-12-1.png 624x240 pixels, 8 bits/pixel, 250 colors in palette Input IDAT size = 4723 bytes Input file size = 5563 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4265 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4256 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4256 Output IDAT size = 4256 bytes (467 bytes decrease) Output file size = 5096 bytes (467 bytes = 8.39% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-15-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29336 bytes Input file size = 29450 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22381 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22381 Output IDAT size = 22381 bytes (6955 bytes decrease) Output file size = 22459 bytes (6991 bytes = 23.74% decrease) --- finished re-building ‘treat_and_exposure.Rmd’ SUMMARY: processing the following file failed: ‘survival.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.8.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘clustered.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/clustered_files/figure-html/unnamed-chunk-5-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12034 bytes Input file size = 12124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9797 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9797 Output IDAT size = 9797 bytes (2237 bytes decrease) Output file size = 9875 bytes (2249 bytes = 18.55% decrease) --- finished re-building ‘clustered.Rmd’ --- re-building ‘corelationmat.Rmd’ using rmarkdown --- finished re-building ‘corelationmat.Rmd’ --- re-building ‘correlated.Rmd’ using rmarkdown --- finished re-building ‘correlated.Rmd’ --- re-building ‘customdist.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/customdist_files/figure-html/unnamed-chunk-6-1.png 576x288 pixels, 8 bits/pixel, 213 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3108 bytes Input file size = 3837 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2732 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2728 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2728 Output IDAT size = 2728 bytes (380 bytes decrease) Output file size = 2806 bytes (1031 bytes = 26.87% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/customdist_files/figure-html/unnamed-chunk-11-1.png 768x576 pixels, 8 bits/pixel, 244 colors in palette Input IDAT size = 13068 bytes Input file size = 13902 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11259 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11259 Output IDAT size = 11259 bytes (1809 bytes decrease) Output file size = 12081 bytes (1821 bytes = 13.10% decrease) --- finished re-building ‘customdist.Rmd’ --- re-building ‘double_dot_extension.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/double_dot_extension_files/figure-html/unnamed-chunk-9-1.png 480x288 pixels, 8 bits/pixel, 222 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9977 bytes Input file size = 10745 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9034 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8739 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8739 Output IDAT size = 8739 bytes (1238 bytes decrease) Output file size = 8817 bytes (1928 bytes = 17.94% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/double_dot_extension_files/figure-html/unnamed-chunk-18-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26581 bytes Input file size = 26695 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20943 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20943 Output IDAT size = 20943 bytes (5638 bytes decrease) Output file size = 21021 bytes (5674 bytes = 21.25% decrease) --- finished re-building ‘double_dot_extension.Rmd’ --- re-building ‘logisticCoefs.Rmd’ using rmarkdown --- finished re-building ‘logisticCoefs.Rmd’ --- re-building ‘longitudinal.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/longitudinal_files/figure-html/unnamed-chunk-4-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49877 bytes Input file size = 50027 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41716 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41716 Output IDAT size = 41716 bytes (8161 bytes decrease) Output file size = 41794 bytes (8233 bytes = 16.46% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/longitudinal_files/figure-html/unnamed-chunk-8-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21624 bytes Input file size = 21726 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17073 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17073 Output IDAT size = 17073 bytes (4551 bytes decrease) Output file size = 17151 bytes (4575 bytes = 21.06% decrease) --- finished re-building ‘longitudinal.Rmd’ --- re-building ‘missing.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/missing_files/figure-html/unnamed-chunk-10-1.png 672x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18611 bytes Input file size = 18713 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14756 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14756 Output IDAT size = 14756 bytes (3855 bytes decrease) Output file size = 14834 bytes (3879 bytes = 20.73% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/missing_files/figure-html/unnamed-chunk-12-1.png 672x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18829 bytes Input file size = 18931 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15060 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15060 Output IDAT size = 15060 bytes (3769 bytes decrease) Output file size = 15138 bytes (3793 bytes = 20.04% decrease) --- finished re-building ‘missing.Rmd’ --- re-building ‘ordinal.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/threshold-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18302 bytes Input file size = 18404 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14483 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14483 Output IDAT size = 14483 bytes (3819 bytes decrease) Output file size = 14561 bytes (3843 bytes = 20.88% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/plotB-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12816 bytes Input file size = 12906 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10162 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10162 Output IDAT size = 10162 bytes (2654 bytes decrease) Output file size = 10240 bytes (2666 bytes = 20.66% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/unnamed-chunk-5-1.png 576x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19365 bytes Input file size = 19467 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15496 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15496 Output IDAT size = 15496 bytes (3869 bytes decrease) Output file size = 15574 bytes (3893 bytes = 20.00% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/plotNP-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13018 bytes Input file size = 13108 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10319 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10319 Output IDAT size = 10319 bytes (2699 bytes decrease) Output file size = 10397 bytes (2711 bytes = 20.68% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/unnamed-chunk-10-1.png 576x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19668 bytes Input file size = 19770 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15618 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15618 Output IDAT size = 15618 bytes (4050 bytes decrease) Output file size = 15696 bytes (4074 bytes = 20.61% decrease) --- finished re-building ‘ordinal.Rmd’ --- re-building ‘simstudy.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/simstudy_files/figure-html/unnamed-chunk-16-1.png 480x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19146 bytes Input file size = 19248 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13914 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13914 Output IDAT size = 13914 bytes (5232 bytes decrease) Output file size = 13992 bytes (5256 bytes = 27.31% decrease) --- finished re-building ‘simstudy.Rmd’ --- re-building ‘spline.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-2-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33347 bytes Input file size = 33473 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24865 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24865 Output IDAT size = 24865 bytes (8482 bytes decrease) Output file size = 24943 bytes (8530 bytes = 25.48% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-2-2.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37543 bytes Input file size = 37669 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28860 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28860 Output IDAT size = 28860 bytes (8683 bytes decrease) Output file size = 28938 bytes (8731 bytes = 23.18% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-3-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15012 bytes Input file size = 15102 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11453 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11453 Output IDAT size = 11453 bytes (3559 bytes decrease) Output file size = 11531 bytes (3571 bytes = 23.65% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-3-2.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27698 bytes Input file size = 27812 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20317 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20317 Output IDAT size = 20317 bytes (7381 bytes decrease) Output file size = 20395 bytes (7417 bytes = 26.67% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-5-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13445 bytes Input file size = 13535 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10646 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10646 Output IDAT size = 10646 bytes (2799 bytes decrease) Output file size = 10724 bytes (2811 bytes = 20.77% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-7-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46611 bytes Input file size = 46749 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31843 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31843 Output IDAT size = 31843 bytes (14768 bytes decrease) Output file size = 31921 bytes (14828 bytes = 31.72% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-8-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 50781 bytes Input file size = 50931 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35638 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35638 Output IDAT size = 35638 bytes (15143 bytes decrease) Output file size = 35716 bytes (15215 bytes = 29.87% decrease) --- finished re-building ‘spline.Rmd’ --- re-building ‘survival.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/survival_files/figure-html/unnamed-chunk-6-1.png 624x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23921 bytes Input file size = 24023 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18798 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18798 Output IDAT size = 18798 bytes (5123 bytes decrease) Output file size = 18876 bytes (5147 bytes = 21.43% decrease) Quitting from lines 164-165 [unnamed-chunk-8] (survival.Rmd) Error: processing vignette 'survival.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘survival.Rmd’ --- re-building ‘treat_and_exposure.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-6-1.png 384x576 pixels, 8 bits/pixel, 245 colors in palette Input IDAT size = 9752 bytes Input file size = 10589 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8768 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8768 Output IDAT size = 8768 bytes (984 bytes decrease) Output file size = 9593 bytes (996 bytes = 9.41% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-10-1.png 624x240 pixels, 8 bits/pixel, 250 colors in palette Input IDAT size = 4697 bytes Input file size = 5537 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4264 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4241 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4241 Output IDAT size = 4241 bytes (456 bytes decrease) Output file size = 5081 bytes (456 bytes = 8.24% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-12-1.png 624x240 pixels, 8 bits/pixel, 250 colors in palette Input IDAT size = 4738 bytes Input file size = 5578 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4272 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4263 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4263 Output IDAT size = 4263 bytes (475 bytes decrease) Output file size = 5103 bytes (475 bytes = 8.52% decrease) ** Processing: /data/gannet/ripley/R/packages/tests-clang/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-15-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29347 bytes Input file size = 29461 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22407 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22407 Output IDAT size = 22407 bytes (6940 bytes decrease) Output file size = 22485 bytes (6976 bytes = 23.68% decrease) --- finished re-building ‘treat_and_exposure.Rmd’ SUMMARY: processing the following file failed: ‘survival.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.8.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘clustered.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/clustered_files/figure-html/unnamed-chunk-5-1.png 672x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12034 bytes Input file size = 12124 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9797 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9797 Output IDAT size = 9797 bytes (2237 bytes decrease) Output file size = 9875 bytes (2249 bytes = 18.55% decrease) --- finished re-building ‘clustered.Rmd’ --- re-building ‘corelationmat.Rmd’ using rmarkdown --- finished re-building ‘corelationmat.Rmd’ --- re-building ‘correlated.Rmd’ using rmarkdown --- finished re-building ‘correlated.Rmd’ --- re-building ‘customdist.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/customdist_files/figure-html/unnamed-chunk-6-1.png 576x288 pixels, 8 bits/pixel, 213 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 3108 bytes Input file size = 3837 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 2732 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2728 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 2728 Output IDAT size = 2728 bytes (380 bytes decrease) Output file size = 2806 bytes (1031 bytes = 26.87% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/customdist_files/figure-html/unnamed-chunk-11-1.png 768x576 pixels, 8 bits/pixel, 244 colors in palette Input IDAT size = 13068 bytes Input file size = 13902 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11259 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11259 Output IDAT size = 11259 bytes (1809 bytes decrease) Output file size = 12081 bytes (1821 bytes = 13.10% decrease) --- finished re-building ‘customdist.Rmd’ --- re-building ‘double_dot_extension.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/double_dot_extension_files/figure-html/unnamed-chunk-9-1.png 480x288 pixels, 8 bits/pixel, 222 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9977 bytes Input file size = 10745 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9034 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8739 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 8739 Output IDAT size = 8739 bytes (1238 bytes decrease) Output file size = 8817 bytes (1928 bytes = 17.94% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/double_dot_extension_files/figure-html/unnamed-chunk-18-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26581 bytes Input file size = 26695 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20943 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20943 Output IDAT size = 20943 bytes (5638 bytes decrease) Output file size = 21021 bytes (5674 bytes = 21.25% decrease) --- finished re-building ‘double_dot_extension.Rmd’ --- re-building ‘logisticCoefs.Rmd’ using rmarkdown --- finished re-building ‘logisticCoefs.Rmd’ --- re-building ‘longitudinal.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/longitudinal_files/figure-html/unnamed-chunk-4-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49877 bytes Input file size = 50027 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41716 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41716 Output IDAT size = 41716 bytes (8161 bytes decrease) Output file size = 41794 bytes (8233 bytes = 16.46% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/longitudinal_files/figure-html/unnamed-chunk-8-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21624 bytes Input file size = 21726 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17073 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17073 Output IDAT size = 17073 bytes (4551 bytes decrease) Output file size = 17151 bytes (4575 bytes = 21.06% decrease) --- finished re-building ‘longitudinal.Rmd’ --- re-building ‘missing.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/missing_files/figure-html/unnamed-chunk-10-1.png 672x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18611 bytes Input file size = 18713 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14756 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14756 Output IDAT size = 14756 bytes (3855 bytes decrease) Output file size = 14834 bytes (3879 bytes = 20.73% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/missing_files/figure-html/unnamed-chunk-12-1.png 672x576 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18829 bytes Input file size = 18931 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15060 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15060 Output IDAT size = 15060 bytes (3769 bytes decrease) Output file size = 15138 bytes (3793 bytes = 20.04% decrease) --- finished re-building ‘missing.Rmd’ --- re-building ‘ordinal.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/threshold-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18302 bytes Input file size = 18404 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14483 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14483 Output IDAT size = 14483 bytes (3819 bytes decrease) Output file size = 14561 bytes (3843 bytes = 20.88% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/plotB-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 12816 bytes Input file size = 12906 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10162 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10162 Output IDAT size = 10162 bytes (2654 bytes decrease) Output file size = 10240 bytes (2666 bytes = 20.66% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/unnamed-chunk-5-1.png 576x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19365 bytes Input file size = 19467 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15496 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15496 Output IDAT size = 15496 bytes (3869 bytes decrease) Output file size = 15574 bytes (3893 bytes = 20.00% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/plotNP-1.png 504x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13018 bytes Input file size = 13108 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10319 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10319 Output IDAT size = 10319 bytes (2699 bytes decrease) Output file size = 10397 bytes (2711 bytes = 20.68% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/ordinal_files/figure-html/unnamed-chunk-10-1.png 576x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19668 bytes Input file size = 19770 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15618 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15618 Output IDAT size = 15618 bytes (4050 bytes decrease) Output file size = 15696 bytes (4074 bytes = 20.61% decrease) --- finished re-building ‘ordinal.Rmd’ --- re-building ‘simstudy.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/simstudy_files/figure-html/unnamed-chunk-16-1.png 480x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19147 bytes Input file size = 19249 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13915 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13915 Output IDAT size = 13915 bytes (5232 bytes decrease) Output file size = 13993 bytes (5256 bytes = 27.31% decrease) --- finished re-building ‘simstudy.Rmd’ --- re-building ‘spline.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-2-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33343 bytes Input file size = 33469 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24870 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24870 Output IDAT size = 24870 bytes (8473 bytes decrease) Output file size = 24948 bytes (8521 bytes = 25.46% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-2-2.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 37549 bytes Input file size = 37675 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28859 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28859 Output IDAT size = 28859 bytes (8690 bytes decrease) Output file size = 28937 bytes (8738 bytes = 23.19% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-3-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 15006 bytes Input file size = 15096 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11448 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11448 Output IDAT size = 11448 bytes (3558 bytes decrease) Output file size = 11526 bytes (3570 bytes = 23.65% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-3-2.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27699 bytes Input file size = 27813 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20321 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20321 Output IDAT size = 20321 bytes (7378 bytes decrease) Output file size = 20399 bytes (7414 bytes = 26.66% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-5-1.png 576x240 pixels, 3x8 bits/pixel, RGB Input IDAT size = 13444 bytes Input file size = 13534 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10644 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10644 Output IDAT size = 10644 bytes (2800 bytes decrease) Output file size = 10722 bytes (2812 bytes = 20.78% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-7-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46614 bytes Input file size = 46752 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31843 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31843 Output IDAT size = 31843 bytes (14771 bytes decrease) Output file size = 31921 bytes (14831 bytes = 31.72% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/spline_files/figure-html/unnamed-chunk-8-1.png 576x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 50757 bytes Input file size = 50907 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35631 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35631 Output IDAT size = 35631 bytes (15126 bytes decrease) Output file size = 35709 bytes (15198 bytes = 29.85% decrease) --- finished re-building ‘spline.Rmd’ --- re-building ‘survival.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/survival_files/figure-html/unnamed-chunk-6-1.png 624x336 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23921 bytes Input file size = 24023 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18798 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18798 Output IDAT size = 18798 bytes (5123 bytes decrease) Output file size = 18876 bytes (5147 bytes = 21.43% decrease) Quitting from lines 164-165 [unnamed-chunk-8] (survival.Rmd) Error: processing vignette 'survival.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building ‘survival.Rmd’ --- re-building ‘treat_and_exposure.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-6-1.png 384x576 pixels, 8 bits/pixel, 245 colors in palette Input IDAT size = 9796 bytes Input file size = 10633 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8779 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8779 Output IDAT size = 8779 bytes (1017 bytes decrease) Output file size = 9604 bytes (1029 bytes = 9.68% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-10-1.png 624x240 pixels, 8 bits/pixel, 250 colors in palette Input IDAT size = 4728 bytes Input file size = 5568 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4267 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4253 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4253 Output IDAT size = 4253 bytes (475 bytes decrease) Output file size = 5093 bytes (475 bytes = 8.53% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-12-1.png 624x240 pixels, 8 bits/pixel, 250 colors in palette Input IDAT size = 4728 bytes Input file size = 5568 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4260 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4249 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4249 Output IDAT size = 4249 bytes (479 bytes decrease) Output file size = 5089 bytes (479 bytes = 8.60% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simstudy.Rcheck/vign_test/simstudy/vignettes/treat_and_exposure_files/figure-html/unnamed-chunk-15-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 29336 bytes Input file size = 29450 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22381 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22381 Output IDAT size = 22381 bytes (6955 bytes decrease) Output file size = 22459 bytes (6991 bytes = 23.74% decrease) --- finished re-building ‘treat_and_exposure.Rmd’ SUMMARY: processing the following file failed: ‘survival.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

Version: 0.8.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'clustered.Rmd' using rmarkdown --- finished re-building 'clustered.Rmd' --- re-building 'corelationmat.Rmd' using rmarkdown --- finished re-building 'corelationmat.Rmd' --- re-building 'correlated.Rmd' using rmarkdown --- finished re-building 'correlated.Rmd' --- re-building 'customdist.Rmd' using rmarkdown --- finished re-building 'customdist.Rmd' --- re-building 'double_dot_extension.Rmd' using rmarkdown --- finished re-building 'double_dot_extension.Rmd' --- re-building 'logisticCoefs.Rmd' using rmarkdown --- finished re-building 'logisticCoefs.Rmd' --- re-building 'longitudinal.Rmd' using rmarkdown --- finished re-building 'longitudinal.Rmd' --- re-building 'missing.Rmd' using rmarkdown --- finished re-building 'missing.Rmd' --- re-building 'ordinal.Rmd' using rmarkdown --- finished re-building 'ordinal.Rmd' --- re-building 'simstudy.Rmd' using rmarkdown --- finished re-building 'simstudy.Rmd' --- re-building 'spline.Rmd' using rmarkdown --- finished re-building 'spline.Rmd' --- re-building 'survival.Rmd' using rmarkdown Quitting from lines 164-165 [unnamed-chunk-8] (survival.Rmd) Error: processing vignette 'survival.Rmd' failed with diagnostics: The package "broom.helpers" (>= 1.15.0) is required. --- failed re-building 'survival.Rmd' --- re-building 'treat_and_exposure.Rmd' using rmarkdown --- finished re-building 'treat_and_exposure.Rmd' SUMMARY: processing the following file failed: 'survival.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64