Last updated on 2025-02-22 06:51:35 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.0 | 21.14 | 260.01 | 281.15 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.4.0 | 14.59 | 174.56 | 189.15 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.4.0 | 484.31 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4.0 | 475.80 | OK | |||
| r-devel-macos-arm64 | 1.4.0 | 119.00 | OK | |||
| r-devel-macos-x86_64 | 1.4.0 | 227.00 | ERROR | |||
| r-devel-windows-x86_64 | 1.4.0 | 24.00 | 241.00 | 265.00 | OK | |
| r-patched-linux-x86_64 | 1.4.0 | 22.52 | 246.91 | 269.43 | OK | |
| r-release-linux-x86_64 | 1.4.0 | 19.74 | 246.66 | 266.40 | OK | |
| r-release-macos-arm64 | 1.4.0 | 122.00 | NOTE | |||
| r-release-macos-x86_64 | 1.4.0 | 193.00 | NOTE | |||
| r-release-windows-x86_64 | 1.4.0 | 22.00 | 244.00 | 266.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.0 | 135.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.4.0 | 214.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.4.0 | 30.00 | 321.00 | 351.00 | NOTE |
Version: 1.4.0
Check: examples
Result: ERROR
Running examples in ‘MARVEL-Ex.R’ failed
The error most likely occurred in:
> ### Name: RunPCA.Exp
> ### Title: Principle component analysis for gene Data
> ### Aliases: RunPCA.Exp
>
> ### ** Examples
>
> marvel.demo <- readRDS(system.file("extdata/data", "marvel.demo.rds", package="MARVEL"))
>
> # Define genes for analysis
> gene_ids <- marvel.demo$Exp$gene_id
>
> # PCA
> marvel.demo <- RunPCA.Exp(MarvelObject=marvel.demo,
+ sample.ids=marvel.demo$SplicePheno$sample.id,
+ cell.group.column="cell.type",
+ cell.group.order=c("iPSC", "Endoderm"),
+ min.cells=5,
+ features=gene_ids,
+ point.size=2
+ )
Error in loadNamespace(x) : there is no package called ‘FactoMineR’
Calls: RunPCA.Exp ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-devel-macos-x86_64
Version: 1.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘MARVEL.Rmd’ using rmarkdown
Quitting from lines 60-71 [unnamed-chunk-4] (MARVEL.Rmd)
Error: processing vignette 'MARVEL.Rmd' failed with diagnostics:
there is no package called 'FactoMineR'
--- failed re-building ‘MARVEL.Rmd’
SUMMARY: processing the following file failed:
‘MARVEL.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-macos-x86_64
Version: 1.4.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.NCBI.GRCh38', 'org.Mm.eg.db', 'wiggleplotr'
Flavors: r-release-macos-arm64, r-oldrel-macos-x86_64
Version: 1.4.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.NCBI.GRCh38', 'wiggleplotr'
Flavor: r-release-macos-x86_64
Version: 1.4.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.NCBI.GRCh38', 'clusterProfiler', 'org.Mm.eg.db',
'wiggleplotr'
Flavor: r-oldrel-macos-arm64
Version: 1.4.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'BSgenome.Hsapiens.NCBI.GRCh38'
Flavor: r-oldrel-windows-x86_64