## ----eval=FALSE, include=TRUE------------------------------------------------- # install.packages("ridigbio") ## ----message=FALSE, warning=FALSE--------------------------------------------- library(ridigbio) ## ----echo = FALSE------------------------------------------------------------- verify_galax_records <- FALSE #Test that examples will run tryCatch({ # Your code that might throw an error verify_galax_records <- idig_search_records(rq=list(scientificname="Galax urceolata"), limit = 10 ) }, error = function(e) { # Code to run if an error occurs cat("An error occurred during the idig_search_records call: ", e$message, "\n") cat("Vignettes will not be fully generated. Please try again after resolving the issue.") # Optionally, you can return NULL or an empty dataframe verify_galax_records <- FALSE }) ## ----eval=verify_galax_records------------------------------------------------ galax_records <- idig_search_records(rq=list(scientificname="Galax urceolata")) ## ----eval=verify_galax_records------------------------------------------------ colnames(galax_records) ## ----eval=verify_galax_records------------------------------------------------ diapensiaceae_records <- idig_search_records(rq=list(family="Diapensiaceae"), limit=1000) ## ----eval=verify_galax_records------------------------------------------------ rq_input <- list("scientificname"=list("type"="exists"), "family"="Diapensiaceae", geopoint=list( type="geo_bounding_box", top_left=list(lon = -98.16, lat = 48.92), bottom_right=list(lon = -64.02, lat = 23.06) ) ) ## ----eval=verify_galax_records------------------------------------------------ diapensiaceae_records_USA <- idig_search_records(rq_input, limit=1000) ## ----eval=verify_galax_records------------------------------------------------ galax_media <- idig_search_media(rq=list(scientificname="Galax urceolata")) ## ----eval=verify_galax_records------------------------------------------------ colnames(galax_media) ## ----eval=verify_galax_records------------------------------------------------ galax_media2 <- idig_search_media(rq=list(scientificname="Galax urceolata"), mq=list("data.ac:accessURI"=list("type"="exists")))