## ----'preamble', include=FALSE, warning=FALSE, message=FALSE---- library(knitr) # set the knitr options ... for everyone! # if you unset this, then vignette build bonks. oh, joy. #opts_knit$set(progress=TRUE) opts_knit$set(eval.after='fig.cap') # for a package vignette, you do want to echo. # opts_chunk$set(echo=FALSE,warning=FALSE,message=FALSE) opts_chunk$set(warning=FALSE,message=FALSE) #opts_chunk$set(results="asis") opts_chunk$set(cache=TRUE,cache.path="cache/fromo_") #opts_chunk$set(fig.path="figure/",dev=c("pdf","cairo_ps")) opts_chunk$set(fig.path="figure/fromo_",dev=c("pdf")) opts_chunk$set(fig.width=5,fig.height=4,dpi=64) # doing this means that png files are made of figures; # the savings is small, and it looks like shit: #opts_chunk$set(fig.path="figure/",dev=c("png","pdf","cairo_ps")) #opts_chunk$set(fig.width=4,fig.height=4) # for figures? this is sweave-specific? #opts_knit$set(eps=TRUE) # this would be for figures: #opts_chunk$set(out.width='.8\\textwidth') # for text wrapping: options(width=64,digits=2) opts_chunk$set(size="small") opts_chunk$set(tidy=TRUE,tidy.opts=list(width.cutoff=50,keep.blank.line=TRUE)) compile.time <- Sys.time() # from the environment # only recompute if FORCE_RECOMPUTE=True w/out case match. FORCE_RECOMPUTE <- (toupper(Sys.getenv('FORCE_RECOMPUTE',unset='False')) == "TRUE") # compiler flags! # not used yet LONG.FORM <- FALSE