Changes in aphylo version 0.3-4 - Fixing documentation (CRAN request). Changes in aphylo version 0.3-3 - Removing C++ requirement as requested by CRAN. Changes in aphylo version 0.3-2 - Fixes a bug when using the stationary value of the root node probability. Changes in aphylo version 0.3-1 - Re-instating the package to CRAN. - Small changes in C++ formatting and conventions to please CRAN. - Fixes a bug when using the stationary value of the root node probability. Changes in aphylo version 0.3-0 - Preparing for CRAN. - Added examples to every function. - Fixed bug in auc(): Was still using NAs in the predicted values. - Fixed bug in aphylo_formulae(): Passing subsetted trees, e.g., atree[[1]], now works. Changes in aphylo version 0.1.99 - First version