Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' <https://project.inria.fr/gudhi/software/>, 'Dionysus' <https://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2014) <doi:10.1145/2582112.2582128> for analyzing the statistical significance of persistent homology features.
| Version: | 1.9.1 |
| Depends: | R (≥ 3.1.0) |
| Imports: | FNN, Rcpp (≥ 0.11.0), igraph, parallel, scales |
| LinkingTo: | BH (≥ 1.81.0-1), Rcpp, RcppEigen |
| Suggests: | testthat, lintr |
| Published: | 2024-01-24 |
| DOI: | 10.32614/CRAN.package.TDA |
| Author: | Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria, David L. Millman, Vincent Rouvreau. |
| Maintainer: | Jisu Kim <jkim82133 at snu.ac.kr> |
| License: | GPL-3 |
| Copyright: | See inst/COPYRIGHTS TDA copyright details |
| NeedsCompilation: | yes |
| SystemRequirements: | gmp, GNU make |
| Materials: | README NEWS |
| CRAN checks: | TDA results [issues need fixing before 2025-01-27] |
| Reference manual: | TDA.pdf |
| Vignettes: |
Introduction to TDA (source, R code) |
| Package source: | TDA_1.9.1.tar.gz |
| Windows binaries: | r-devel: TDA_1.9.1.zip, r-release: TDA_1.9.1.zip, r-oldrel: TDA_1.9.1.zip |
| macOS binaries: | r-release (arm64): TDA_1.9.1.tgz, r-oldrel (arm64): TDA_1.9.1.tgz, r-release (x86_64): TDA_1.9.1.tgz, r-oldrel (x86_64): TDA_1.9.1.tgz |
| Old sources: | TDA archive |
| Reverse imports: | ashapesampler, etree, RPointCloud, TDAvec |
| Reverse suggests: | archiDART, interplex, TDApplied |
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