Last updated on 2024-09-12 05:49:56 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.0 | 5.69 | 141.71 | 147.40 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.0 | 3.68 | 70.20 | 73.88 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.0 | 219.79 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.0 | 240.71 | OK | |||
| r-devel-windows-x86_64 | 0.3.0 | 8.00 | 131.00 | 139.00 | OK | |
| r-patched-linux-x86_64 | 0.3.0 | 4.89 | 134.24 | 139.13 | OK | |
| r-release-linux-x86_64 | 0.3.0 | 6.14 | 135.01 | 141.15 | OK | |
| r-release-macos-arm64 | 0.3.0 | 66.00 | OK | |||
| r-release-macos-x86_64 | 0.3.0 | 92.00 | OK | |||
| r-release-windows-x86_64 | 0.3.0 | 6.00 | 132.00 | 138.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.0 | 65.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.3.0 | 124.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.3.0 | 9.00 | 164.00 | 173.00 | OK |
Version: 0.3.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'flextable', 'officer'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: examples
Result: ERROR
Running examples in ‘visOmopResults-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fxTable
> ### Title: Creates a flextable object from a dataframe
> ### Aliases: fxTable
>
> ### ** Examples
>
> mockSummarisedResult() |>
+ formatEstimateValue(decimals = c(integer = 0, numeric = 1)) |>
+ formatHeader(header = c("Study strata", "strata_name", "strata_level"),
+ includeHeaderName = FALSE) |>
+ fxTable(
+ style = "default",
+ na = "--",
+ title = "fxTable example",
+ subtitle = NULL,
+ caption = NULL,
+ groupColumn = "group_level",
+ groupAsColumn = TRUE,
+ groupOrder = c("cohort1", "cohort2"),
+ colsToMergeRows = "all_columns"
+ )
Error in fxTable(formatHeader(formatEstimateValue(mockSummarisedResult(), :
The package "flextable" is required.
Calls: fxTable -> <Anonymous>
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [28s/20s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(visOmopResults)
>
> test_check("visOmopResults")
Starting 2 test processes
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 273 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-fxTable.R:9:3'): fxTable ───────────────────────────────────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `fxTable(table_to_format, style = list(header = list(cell = officer::fp_cell(background.color = "#c8c8c8"),
text = officer::fp_text(bold = TRUE)), header_name = list(cell = officer::fp_cell(background.color = "#d9d9d9"),
text = officer::fp_text(bold = TRUE)), header_level = list(cell = officer::fp_cell(background.color = "#e1e1e1"),
text = officer::fp_text(bold = TRUE)), column_name = list(text = officer::fp_text(bold = TRUE)),
title = list(text = officer::fp_text(bold = TRUE, color = "blue"))),
na = NULL, title = "Test 1", subtitle = NULL, caption = NULL,
groupColumn = NULL, groupAsColumn = FALSE, groupOrder = NULL)`: The package "flextable" is required.
Backtrace:
▆
1. └─visOmopResults::fxTable(...) at test-fxTable.R:9:3
2. └─rlang::check_installed("flextable")
── Error ('test-fxTable.R:170:3'): fxTable, test default styles and NULL ───────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `fxTable(table_to_format, style = NULL, na = NULL, title = "Test 1",
subtitle = NULL, caption = NULL, groupColumn = NULL, groupAsColumn = FALSE,
groupOrder = NULL)`: The package "flextable" is required.
Backtrace:
▆
1. └─visOmopResults::fxTable(...) at test-fxTable.R:170:3
2. └─rlang::check_installed("flextable")
── Error ('test-fxTable.R:258:3'): fxTable, test colsToMergeRows ───────────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `fxTable(x = table_to_format, style = "default", na = "-", title = "Title test 2",
subtitle = "Subtitle for test 2", caption = "*This* is the caption",
groupColumn = "group_level", groupAsColumn = FALSE, groupOrder = NULL,
colsToMergeRows = "all_columns")`: The package "flextable" is required.
Backtrace:
▆
1. └─visOmopResults::fxTable(...) at test-fxTable.R:258:3
2. └─rlang::check_installed("flextable")
── Failure ('test-visOmopTable.R:45:3'): visOmopTable ──────────────────────────
Expected `... <- NULL` to run without any errors.
i Actually got a <rlib_error_package_not_found> with text:
The package "flextable" is required.
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-visOmopTable.R:45:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─testthat::expect_no_error(...)
── Error ('test-visOmopTable.R:58:3'): visOmopTable ────────────────────────────
Error in `eval(code, test_env)`: object 'fx1' not found
Backtrace:
▆
1. └─testthat::expect_true("flextable" == class(fx1)) at test-visOmopTable.R:58:3
2. └─testthat::quasi_label(enquo(object), label, arg = "object")
3. └─rlang::eval_bare(expr, quo_get_env(quo))
── Error ('test-visOmopTable.R:197:3'): renameColumn works ─────────────────────
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `visOmopResults::fxTable(x, delim = .options$delim, style = .options$style,
na = .options$na, title = .options$title, subtitle = .options$subtitle,
caption = .options$caption, groupColumn = newGroupcolumn,
groupAsColumn = .options$groupAsColumn, groupOrder = .options$groupOrder,
colsToMergeRows = .options$colsToMergeRows)`: The package "flextable" is required.
Backtrace:
▆
1. ├─testthat::expect_message(...) at test-visOmopTable.R:197:3
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─testthat::expect_warning(...)
8. │ └─testthat:::expect_condition_matching(...)
9. │ └─testthat:::quasi_capture(...)
10. │ ├─testthat (local) .capture(...)
11. │ │ └─base::withCallingHandlers(...)
12. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
13. └─visOmopResults::visOmopTable(...)
14. └─visOmopResults::fxTable(...)
15. └─rlang::check_installed("flextable")
[ FAIL 6 | WARN 0 | SKIP 0 | PASS 273 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘formatFunctions.Rmd’ using rmarkdown
Quitting from lines 171-191 [unnamed-chunk-9] (formatFunctions.Rmd)
Error: processing vignette 'formatFunctions.Rmd' failed with diagnostics:
The package "flextable" is required.
--- failed re-building ‘formatFunctions.Rmd’
--- re-building ‘splitAndUnite.Rmd’ using rmarkdown
--- finished re-building ‘splitAndUnite.Rmd’
--- re-building ‘tidy.Rmd’ using rmarkdown
--- finished re-building ‘tidy.Rmd’
SUMMARY: processing the following file failed:
‘formatFunctions.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc