Last updated on 2024-11-18 05:50:31 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.0 | 71.31 | 213.62 | 284.93 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.0 | 53.10 | 192.00 | 245.10 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.0 | 480.77 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.0 | 539.09 | OK | |||
| r-devel-windows-x86_64 | 1.2.0 | 82.00 | 265.00 | 347.00 | OK | |
| r-patched-linux-x86_64 | 1.2.0 | 77.61 | 228.65 | 306.26 | OK | |
| r-release-linux-x86_64 | 1.2.0 | 76.00 | 230.05 | 306.05 | OK | |
| r-release-macos-arm64 | 1.2.0 | 141.00 | NOTE | |||
| r-release-macos-x86_64 | 1.2.0 | 188.00 | NOTE | |||
| r-release-windows-x86_64 | 1.2.0 | 70.00 | 216.00 | 286.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.0 | 136.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.2.0 | 222.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.2.0 | 100.00 | 336.00 | 436.00 | OK |
Version: 1.2.0
Check: examples
Result: ERROR
Running examples in ‘rTwig-Ex.R’ failed
The error most likely occurred in:
> ### Name: correct_radii
> ### Title: Correct Radii
> ### Aliases: correct_radii
>
> ### ** Examples
>
>
> ## TreeQSM Processing Chain
> file <- system.file("extdata/QSM.mat", package = "rTwig")
> qsm <- import_qsm(file)
Importing TreeQSM
> cylinder <- qsm$cylinder
> cylinder <- update_cylinders(cylinder)
Updating Cylinder Ordering
Calculating Total Children
Building Cylinder Network
Caching Network
Verifying Topology
Calculating Growth Length
Calculating Reverse Branch Order
Calculating Branch Segments
Calculating Alternate Branch Numbers
Calculating Path Metrics
> cylinder <- correct_radii(cylinder, twig_radius = 4.23)
Generating Paths
Filtering Paths
Modeling Paths
Updating Radii
> str(cylinder)
Classes ‘tidytable’, ‘tbl’, ‘data.table’ and 'data.frame': 1136 obs. of 33 variables:
$ length : num 0.09392 0.07216 0.06654 0.00938 0.06795 ...
$ start.x : num 0.768 0.768 0.768 0.769 0.769 ...
$ start.y : num -16.4 -16.4 -16.4 -16.3 -16.3 ...
$ start.z : num 254 254 254 254 254 ...
$ axis.x : num 0.00995 -0.0111 0.01364 0.01571 0.01449 ...
$ axis.y : num 0.0912 0.0391 0.0367 0.0271 0.0267 ...
$ axis.z : num 0.996 0.999 0.999 1 1 ...
$ end.x : num 0.769 0.768 0.769 0.769 0.77 ...
$ end.y : num -16.4 -16.4 -16.3 -16.3 -16.3 ...
$ end.z : num 254 254 254 254 254 ...
$ added : num 0 0 0 0 0 0 0 0 0 0 ...
$ BranchOrder : int 0 0 0 0 0 0 0 0 0 0 ...
$ reverseBranchOrder : num 20 20 20 20 20 20 20 20 20 20 ...
$ PositionInBranch : int 1 2 3 4 5 6 7 8 9 10 ...
$ segment : int 1 1 1 1 1 1 1 1 1 1 ...
$ parentSegment : int 0 0 0 0 0 0 0 0 0 0 ...
$ mad : num 0.00072 0.000538 0.000523 0.000335 0.000438 ...
$ SurfCov : num 0.875 1 1 1 1 1 1 1 1 1 ...
$ UnmodRadius : num 0.0465 0.0454 0.0442 0.0437 0.0429 ...
$ OldRadius : num 0.0465 0.0454 0.0442 0.0437 0.0429 ...
$ growthLength : num 32.8 32.7 32.6 32.6 32.6 ...
$ branch : int 1 1 1 1 1 1 1 1 1 1 ...
$ branch_alt : int 0 0 0 0 0 0 0 0 0 0 ...
$ parent : num 0 1 2 3 4 5 6 7 8 9 ...
$ extension : int 1 2 3 4 5 6 7 8 9 10 ...
$ totalChildren : int 1 1 1 1 1 1 1 1 1 1 ...
$ distanceFromBase : num 0.0939 0.1661 0.2326 0.242 0.31 ...
$ distanceToTwig : num 3.4 3.31 3.24 3.17 3.16 ...
$ reversePipeAreaBranchorder : int 82 82 82 82 82 82 82 82 82 82 ...
$ reversePipeRadiusBranchorder: num 9.06 9.06 9.06 9.06 9.06 ...
$ vesselVolume : num 279 271 266 260 259 ...
$ radius : num 0.0465 0.0454 0.0442 0.0437 0.0429 ...
$ modified : num 0 0 0 0 0 0 0 0 0 0 ...
- attr(*, ".internal.selfref")=<externalptr>
>
> ## SimpleForest Processing Chain
> file <- system.file("extdata/QSM.csv", package = "rTwig")
> cylinder <- read.csv(file)
> cylinder <- update_cylinders(cylinder)
Finding Branches
Calculating Total Children
Building Cylinder Network
Caching Network
Verifying Topology
Calculating Path Metrics
> cylinder <- correct_radii(cylinder, twig_radius = 4.23)
Generating Paths
Filtering Paths
Modeling Paths
Error in x %*% coefficients : NA/NaN/Inf in foreign function call (arg 2)
Calls: correct_radii ... summarize.tidytable -> eval_tidy -> [ -> [.data.table -> path_gam
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.0
Check: installed package size
Result: NOTE
installed size is 6.6Mb
sub-directories of 1Mb or more:
extdata 1.0Mb
libs 4.5Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64