Last updated on 2025-03-09 05:52:26 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 3.11 | 252.69 | 255.80 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 2.20 | 103.09 | 105.29 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 263.45 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 418.24 | NOTE | |||
| r-devel-macos-arm64 | 1.0.0 | 116.00 | OK | |||
| r-devel-macos-x86_64 | 1.0.0 | 269.00 | NOTE | |||
| r-devel-windows-x86_64 | 1.0.0 | 7.00 | 337.00 | 344.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.0 | 3.09 | 240.42 | 243.51 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 2.35 | 240.82 | 243.17 | OK | |
| r-release-macos-arm64 | 1.0.0 | 121.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 200.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 5.00 | 336.00 | 341.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.0 | 259.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 7.00 | 360.00 | 367.00 | OK |
Version: 1.0.0
Check: DESCRIPTION meta-information
Result: NOTE
Missing dependency on R >= 4.1.0 because package code uses the pipe
|> or function shorthand \(...) syntax added in R 4.1.0.
File(s) using such syntax:
‘subsample_circle.R’ ‘subsample_lat_band.R’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64, r-devel-windows-x86_64
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘divvy-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: rangeSize
> ### Title: Calculate common metrics of spatial distribution
> ### Aliases: rangeSize
>
> ### ** Examples
>
> # generate 20 occurrences for a pseudo-species
> # centred on Yellowstone National Park (latitude-longitude)
> # normally distributed with a standard deviation ~110 km
> set.seed(2)
> x <- rnorm(20, 110.5885, 2)
> y <- rnorm(20, 44.4280, 1)
> pts <- cbind(x,y)
>
> rangeSize(pts)
Error in UseMethod("units") :
no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
Calls: rangeSize -> cbind -> cbind -> units
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
bandit 5.674 0.234 7.857
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(divvy)
>
> test_check("divvy")
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 22 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_calc_eco_variables.R:4:3'): rangeSize returns appropriate values ──
Error in `UseMethod("units")`: no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
Backtrace:
▆
1. └─divvy::rangeSize(xy) at test_calc_eco_variables.R:4:3
2. └─base::cbind(...)
3. └─units (local) cbind(deparse.level, ...)
4. └─base::units(dots[[1]])
── Error ('test_calc_eco_variables.R:19:3'): sdSumry returns values within basic tolerance limits ──
Error in `UseMethod("units")`: no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
Backtrace:
▆
1. └─divvy::sdSumry(...) at test_calc_eco_variables.R:19:3
2. └─divvy (local) dfsumry(dat)
3. └─divvy::rangeSize(coords = locs, crs = crs)
4. └─base::cbind(...)
5. └─units (local) cbind(deparse.level, ...)
6. └─base::units(dots[[1]])
── Failure ('test_calc_eco_variables.R:42:3'): rangeSize and sdSumry accept projected coords ──
Expected `rangeSize(bivAlt[, xyCell], crs = prj)` to run without any conditions.
i Actually got a <simpleError> with text:
no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
── Error ('test_calc_eco_variables.R:43:3'): rangeSize and sdSumry accept projected coords ──
Error in `UseMethod("units")`: no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
Backtrace:
▆
1. └─divvy::rangeSize(bivAlt[, xyCell], crs = prj) at test_calc_eco_variables.R:43:3
2. └─base::cbind(...)
3. └─units (local) cbind(deparse.level, ...)
4. └─base::units(dots[[1]])
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 22 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘habitat-rangesize-case-study.Rmd’ using rmarkdown
--- finished re-building ‘habitat-rangesize-case-study.Rmd’
--- re-building ‘subsampling-vignette.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/divvy.Rcheck/vign_test/divvy/vignettes/subsampling-vignette_files/figure-html/map data-1.png
576x288 pixels, 8 bits/pixel, 168 colors in palette
Input IDAT size = 24311 bytes
Input file size = 24929 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22843
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22843
Output IDAT size = 22843 bytes (1468 bytes decrease)
Output file size = 23437 bytes (1492 bytes = 5.98% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/divvy.Rcheck/vign_test/divvy/vignettes/subsampling-vignette_files/figure-html/map subsample-1.png
576x288 pixels, 8 bits/pixel, 169 colors in palette
Input IDAT size = 24332 bytes
Input file size = 24953 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22865
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22865
Output IDAT size = 22865 bytes (1467 bytes decrease)
Output file size = 23462 bytes (1491 bytes = 5.98% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/divvy.Rcheck/vign_test/divvy/vignettes/subsampling-vignette_files/figure-html/count pool size-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 63559 bytes
Input file size = 63721 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42150
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42150
Output IDAT size = 42150 bytes (21409 bytes decrease)
Output file size = 42228 bytes (21493 bytes = 33.73% decrease)
Quitting from lines 254-271 [meta data] (subsampling-vignette.Rmd)
Error: processing vignette 'subsampling-vignette.Rmd' failed with diagnostics:
no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
--- failed re-building ‘subsampling-vignette.Rmd’
SUMMARY: processing the following file failed:
‘subsampling-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘divvy-Ex.R’ failed
The error most likely occurred in:
> ### Name: rangeSize
> ### Title: Calculate common metrics of spatial distribution
> ### Aliases: rangeSize
>
> ### ** Examples
>
> # generate 20 occurrences for a pseudo-species
> # centred on Yellowstone National Park (latitude-longitude)
> # normally distributed with a standard deviation ~110 km
> set.seed(2)
> x <- rnorm(20, 110.5885, 2)
> y <- rnorm(20, 44.4280, 1)
> pts <- cbind(x,y)
>
> rangeSize(pts)
Error in UseMethod("units") :
no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
Calls: rangeSize -> cbind -> cbind -> units
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [43s/112s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(divvy)
>
> test_check("divvy")
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 22 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_calc_eco_variables.R:4:3'): rangeSize returns appropriate values ──
Error in `UseMethod("units")`: no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
Backtrace:
▆
1. └─divvy::rangeSize(xy) at test_calc_eco_variables.R:4:3
2. └─base::cbind(...)
3. └─units (local) cbind(deparse.level, ...)
4. └─base::units(dots[[1]])
── Error ('test_calc_eco_variables.R:19:3'): sdSumry returns values within basic tolerance limits ──
Error in `UseMethod("units")`: no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
Backtrace:
▆
1. └─divvy::sdSumry(...) at test_calc_eco_variables.R:19:3
2. └─divvy (local) dfsumry(dat)
3. └─divvy::rangeSize(coords = locs, crs = crs)
4. └─base::cbind(...)
5. └─units (local) cbind(deparse.level, ...)
6. └─base::units(dots[[1]])
── Failure ('test_calc_eco_variables.R:42:3'): rangeSize and sdSumry accept projected coords ──
Expected `rangeSize(bivAlt[, xyCell], crs = prj)` to run without any conditions.
i Actually got a <simpleError> with text:
no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
── Error ('test_calc_eco_variables.R:43:3'): rangeSize and sdSumry accept projected coords ──
Error in `UseMethod("units")`: no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
Backtrace:
▆
1. └─divvy::rangeSize(bivAlt[, xyCell], crs = prj) at test_calc_eco_variables.R:43:3
2. └─base::cbind(...)
3. └─units (local) cbind(deparse.level, ...)
4. └─base::units(dots[[1]])
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 22 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘habitat-rangesize-case-study.Rmd’ using rmarkdown
--- finished re-building ‘habitat-rangesize-case-study.Rmd’
--- re-building ‘subsampling-vignette.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/divvy.Rcheck/vign_test/divvy/vignettes/subsampling-vignette_files/figure-html/map data-1.png
576x288 pixels, 8 bits/pixel, 168 colors in palette
Input IDAT size = 24231 bytes
Input file size = 24849 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22782
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22782
Output IDAT size = 22782 bytes (1449 bytes decrease)
Output file size = 23376 bytes (1473 bytes = 5.93% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/divvy.Rcheck/vign_test/divvy/vignettes/subsampling-vignette_files/figure-html/map subsample-1.png
576x288 pixels, 8 bits/pixel, 169 colors in palette
Input IDAT size = 24253 bytes
Input file size = 24874 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22810
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22810
Output IDAT size = 22810 bytes (1443 bytes decrease)
Output file size = 23407 bytes (1467 bytes = 5.90% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/divvy.Rcheck/vign_test/divvy/vignettes/subsampling-vignette_files/figure-html/count pool size-1.png
576x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 63158 bytes
Input file size = 63320 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37982
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37982
Output IDAT size = 37982 bytes (25176 bytes decrease)
Output file size = 38060 bytes (25260 bytes = 39.89% decrease)
Quitting from lines 254-271 [meta data] (subsampling-vignette.Rmd)
Error: processing vignette 'subsampling-vignette.Rmd' failed with diagnostics:
no applicable method for 'units' applied to an object of class "c('integer', 'numeric')"
--- failed re-building ‘subsampling-vignette.Rmd’
SUMMARY: processing the following file failed:
‘subsampling-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang