Last updated on 2025-03-09 05:52:31 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 8.64 | 855.46 | 864.10 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 5.48 | 599.25 | 604.73 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.0 | 1594.54 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 1388.96 | OK | |||
| r-devel-macos-arm64 | 1.2.0 | 206.00 | OK | |||
| r-devel-macos-x86_64 | 1.2.0 | 439.00 | OK | |||
| r-devel-windows-x86_64 | 1.1.0 | 8.00 | 588.00 | 596.00 | OK | |
| r-patched-linux-x86_64 | 1.1.0 | 7.07 | 816.91 | 823.98 | OK | |
| r-release-linux-x86_64 | 1.1.0 | 6.09 | 812.59 | 818.68 | OK | |
| r-release-macos-arm64 | 1.2.0 | 274.00 | OK | |||
| r-release-macos-x86_64 | 1.2.0 | 487.00 | OK | |||
| r-release-windows-x86_64 | 1.2.0 | 11.00 | 595.00 | 606.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.0 | 258.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.2.0 | 502.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.0 | 12.00 | 816.00 | 828.00 | OK |
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [110s/70s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(IncidencePrevalence)
>
> test_check("IncidencePrevalence")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 97 | PASS 59 ]
══ Skipped tests (97) ══════════════════════════════════════════════════════════
• On CRAN (97): 'test-benchmarkIncidencePrevalence.R:2:3',
'test-benchmarkIncidencePrevalence.R:45:3', 'test-dateUtilities.R:2:3',
'test-estimatePrevalence.R:40:3', 'test-estimatePrevalence.R:92:3',
'test-estimatePrevalence.R:149:3', 'test-estimatePrevalence.R:268:3',
'test-estimatePrevalence.R:412:3', 'test-estimatePrevalence.R:494:3',
'test-estimatePrevalence.R:645:3', 'test-estimatePrevalence.R:696:3',
'test-estimatePrevalence.R:741:3', 'test-estimatePrevalence.R:796:3',
'test-estimatePrevalence.R:844:3', 'test-estimatePrevalence.R:868:3',
'test-estimatePrevalence.R:893:3', 'test-estimatePrevalence.R:1034:3',
'test-estimatePrevalence.R:1081:3', 'test-estimatePrevalence.R:1114:3',
'test-estimatePrevalence.R:1193:3', 'test-estimatePrevalence.R:1245:3',
'test-estimatePrevalence.R:1415:3', 'test-estimatePrevalence.R:1457:3',
'test-estimatePrevalence.R:1503:3', 'test-estimateIncidence.R:57:3',
'test-estimateIncidence.R:120:3', 'test-estimateIncidence.R:230:3',
'test-estimateIncidence.R:300:3', 'test-estimateIncidence.R:399:3',
'test-estimateIncidence.R:503:3', 'test-estimateIncidence.R:598:3',
'test-estimateIncidence.R:762:3', 'test-estimateIncidence.R:869:3',
'test-estimateIncidence.R:1063:3', 'test-estimateIncidence.R:1127:3',
'test-estimateIncidence.R:1184:3', 'test-estimateIncidence.R:1269:3',
'test-estimateIncidence.R:1413:3', 'test-estimateIncidence.R:1529:3',
'test-estimateIncidence.R:1608:3', 'test-estimateIncidence.R:1716:3',
'test-estimateIncidence.R:1820:3', 'test-estimateIncidence.R:1979:3',
'test-estimateIncidence.R:2035:3', 'test-estimateIncidence.R:2233:3',
'test-estimateIncidence.R:2432:3', 'test-estimateIncidence.R:2517:3',
'test-estimateIncidence.R:2943:3', 'test-estimateIncidence.R:2991:3',
'test-estimateIncidence.R:3046:3', 'test-estimateIncidence.R:3104:3',
'test-estimateIncidence.R:3127:3', 'test-estimateIncidence.R:3142:3',
'test-estimateIncidence.R:3182:3', 'test-estimateIncidence.R:3344:3',
'test-estimateIncidence.R:3423:3', 'test-estimateIncidence.R:3467:3',
'test-estimateIncidence.R:3513:3', 'test-estimateIncidence.R:3561:3',
'test-mockIncidencePrevalence.R:2:3', 'test-mockIncidencePrevalence.R:39:3',
'test-mockIncidencePrevalence.R:69:3',
'test-mockIncidencePrevalence.R:171:3', 'test-plotting.R:2:3',
'test-plotting.R:216:3', 'test-plotting.R:265:3', 'test-plotting.R:315:3',
'test-plotting.R:379:3', 'test-tables.R:2:3', 'test-tables.R:126:3',
'test-tidyResults.R:2:3', 'test-tidyResults.R:57:3',
'test-generateDenominatorCohortSet.R:138:3',
'test-generateDenominatorCohortSet.R:185:3',
'test-generateDenominatorCohortSet.R:289:3',
'test-generateDenominatorCohortSet.R:326:3',
'test-generateDenominatorCohortSet.R:591:3',
'test-generateDenominatorCohortSet.R:641:3',
'test-generateDenominatorCohortSet.R:720:3',
'test-generateDenominatorCohortSet.R:812:3',
'test-generateDenominatorCohortSet.R:855:3',
'test-generateDenominatorCohortSet.R:907:3',
'test-generateDenominatorCohortSet.R:991:3',
'test-generateDenominatorCohortSet.R:1118:3',
'test-generateDenominatorCohortSet.R:1199:3',
'test-generateDenominatorCohortSet.R:1263:3',
'test-generateDenominatorCohortSet.R:1316:3',
'test-generateDenominatorCohortSet.R:1374:3',
'test-generateDenominatorCohortSet.R:1449:3',
'test-generateDenominatorCohortSet.R:1572:3',
'test-generateDenominatorCohortSet.R:1673:3',
'test-generateDenominatorCohortSet.R:1726:3',
'test-generateDenominatorCohortSet.R:1789:3',
'test-generateDenominatorCohortSet.R:2018:3',
'test-generateDenominatorCohortSet.R:2109:3',
'test-generateDenominatorCohortSet.R:2309:3',
'test-generateDenominatorCohortSet.R:2413:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-estimateIncidence.R:1049:3'): mock db: multiple denominator inputs ──
<rlib_error_package_not_found/rlang_error/error/condition>
Error in `tableIncidence(inc_1, type = "tibble")`: The package "visOmopResults" (>= 1.0.2) is required.
Backtrace:
▆
1. ├─testthat::expect_identical(...) at test-estimateIncidence.R:1049:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─IncidencePrevalence::tableIncidence(inc_1, type = "tibble")
5. └─rlang::check_installed("visOmopResults", version = "1.0.2")
[ FAIL 1 | WARN 0 | SKIP 97 | PASS 59 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.2.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a01_Introduction_to_IncidencePrevalence.Rmd’ using rmarkdown
Quitting from lines 103-107 [unnamed-chunk-10] (a01_Introduction_to_IncidencePrevalence.Rmd)
Error: processing vignette 'a01_Introduction_to_IncidencePrevalence.Rmd' failed with diagnostics:
The package "visOmopResults" (>= 1.0.2) is required.
--- failed re-building ‘a01_Introduction_to_IncidencePrevalence.Rmd’
--- re-building ‘a02_Creating_denominator_populations.Rmd’ using rmarkdown
--- finished re-building ‘a02_Creating_denominator_populations.Rmd’
--- re-building ‘a03_Creating_target_denominator_populations.Rmd’ using rmarkdown
--- finished re-building ‘a03_Creating_target_denominator_populations.Rmd’
--- re-building ‘a04_Calculating_prevalence.Rmd’ using rmarkdown
Quitting from lines 76-87 [unnamed-chunk-6] (a04_Calculating_prevalence.Rmd)
Error: processing vignette 'a04_Calculating_prevalence.Rmd' failed with diagnostics:
The package "visOmopResults" (>= 1.0.2) is required.
--- failed re-building ‘a04_Calculating_prevalence.Rmd’
--- re-building ‘a05_Calculating_incidence.Rmd’ using rmarkdown
Quitting from lines 105-118 [unnamed-chunk-8] (a05_Calculating_incidence.Rmd)
Error: processing vignette 'a05_Calculating_incidence.Rmd' failed with diagnostics:
The package "visOmopResults" (>= 1.0.2) is required.
--- failed re-building ‘a05_Calculating_incidence.Rmd’
--- re-building ‘a06_Working_with_IncidencePrevalence_Results.Rmd’ using rmarkdown
--- finished re-building ‘a06_Working_with_IncidencePrevalence_Results.Rmd’
--- re-building ‘a07_benchmark.Rmd’ using rmarkdown
--- finished re-building ‘a07_benchmark.Rmd’
SUMMARY: processing the following files failed:
‘a01_Introduction_to_IncidencePrevalence.Rmd’
‘a04_Calculating_prevalence.Rmd’ ‘a05_Calculating_incidence.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64