* using log directory 'd:/Rcompile/CRANpkg/local/4.4/eudract.Rcheck'
* using R version 4.4.3 (2025-02-28 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'eudract/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'eudract' version '1.0.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'eudract' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [2s] ERROR
Running examples in 'eudract-Ex.R' failed
The error most likely occurred in:

> ### Name: clintrials_gov_convert
> ### Title: applies a conversion using xslt from a simple xml file to a
> ###   ClinicalTrials.gov compatible file, and checks against the schema
> ### Aliases: clintrials_gov_convert
> 
> ### ** Examples
> 
> safety_statistics <- safety_summary(safety,
+                                     exposed=c("Experimental"=60,"Control"=67))
> simple <- tempfile(fileext = ".xml")
> eudract <- tempfile(fileext = ".xml")
> ct <- tempfile(fileext = ".xml")
> simple_safety_xml(safety_statistics, simple)
'D:\temp\2025_03_09_01_50_00_26348\RtmpeEd0bl\file19f642a6516c3.xml' is created or modified

Warning in simple_safety_xml(safety_statistics, simple) :
  local complex type: The content model is not determinist.Element 'TABLE': No matching global declaration available for the validation root.
> eudract_convert(input=simple,
+                 output=eudract)
Error in eudract_convert(input = simple, output = eudract) : 
  local complex type: The content model is not determinist.Element 'TABLE': No matching global declaration available for the validation root.
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [10s] ERROR
  Running 'testthat.R' [10s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(eudract)
  > 
  > test_check("eudract")
  [ FAIL 6 | WARN 9 | SKIP 8 | PASS 73 ]
  
  ══ Skipped tests (8) ═══════════════════════════════════════════════════════════
  • Need to have the userid/password as environment variables (3):
    'test_basic.R:324:61', 'test_basic.R:343:61', 'test_errors.R:191:71'
  • On CRAN (5): 'test_dotplot.R:38:3', 'test_dotplot.R:53:3',
    'test_dotplot.R:82:3', 'test_dotplot.R:119:1', 'test_dotplot.R:129:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_basic.R:283:3'): convert to eudract ────────────────────────────
  Error in `eudract_convert(input = file.path(path, "simple.xml"), output = file.path(path, 
      "table_eudract.xml"))`: local complex type: The content model is not determinist.Element 'TABLE': No matching global declaration available for the validation root.
  Backtrace:
      ▆
   1. └─eudract::eudract_convert(...) at test_basic.R:283:3
  ── Error ('test_basic.R:294:4'): convert to ClinicalTrials.Gov ─────────────────
  Error in `clintrials_gov_convert(input = file.path(path, "simple.xml"), 
      original = file.path(original_path, "1234.xml"), output = file.path(path, 
          "table_ct.xml"))`: safety data is invalid
  local complex type: The content model is not determinist.Element 'TABLE': No matching global declaration available for the validation root.
  Backtrace:
      ▆
   1. └─eudract::clintrials_gov_convert(...) at test_basic.R:294:4
  ── Error ('test_errors.R:18:13'): no aes ───────────────────────────────────────
  Error in `eudract_convert(file.path(tempdir(), "test_simple.xml"), file.path(tempdir(), 
      "test_output.xml"))`: local complex type: The content model is not determinist.Element 'TABLE': No matching global declaration available for the validation root.
  Backtrace:
      ▆
   1. ├─testthat::expect_true(...) at test_errors.R:18:13
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─eudract::eudract_convert(...)
  ── Error ('test_errors.R:31:13'): no saes ──────────────────────────────────────
  Error in `eudract_convert(file.path(tempdir(), "test_simple.xml"), file.path(tempdir(), 
      "test_output.xml"))`: local complex type: The content model is not determinist.Element 'TABLE': No matching global declaration available for the validation root.
  Backtrace:
      ▆
   1. ├─testthat::expect_true(...) at test_errors.R:31:13
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─eudract::eudract_convert(...)
  ── Error ('test_errors.R:54:13'): empty group ──────────────────────────────────
  Error in `eudract_convert(file.path(tempdir(), "/test_simple.xml"), file.path(tempdir(), 
      "/test_output.xml"))`: local complex type: The content model is not determinist.Element 'TABLE': No matching global declaration available for the validation root.
  Backtrace:
      ▆
   1. ├─testthat::expect_true(...) at test_errors.R:54:13
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─eudract::eudract_convert(...)
  ── Failure ('test_errors.R:242:3'): invalid ct inputs ──────────────────────────
  `clintrials_gov_convert(...)` threw an error with unexpected message.
  Expected match: "original study file is invalid"
  Actual message: "safety data is invalid\nlocal complex type: The content model is not determinist.Element 'TABLE': No matching global declaration available for the validation root."
  Backtrace:
      ▆
   1. ├─testthat::expect_error(...) at test_errors.R:242:3
   2. │ └─testthat:::quasi_capture(...)
   3. │   ├─testthat (local) .capture(...)
   4. │   │ └─base::withCallingHandlers(...)
   5. │   └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
   6. └─eudract::clintrials_gov_convert(...)
  
  [ FAIL 6 | WARN 9 | SKIP 8 | PASS 73 ]
  Deleting unused snapshots:
  • dotplot/dotplot-ref-rr.svg
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [9s] ERROR
Error(s) in re-building vignettes:
--- re-building 'eudract.Rmd' using rmarkdown

Quitting from lines 71-82 [xml] (eudract.Rmd)
Error: processing vignette 'eudract.Rmd' failed with diagnostics:
local complex type: The content model is not determinist.Element 'TABLE': No matching global declaration available for the validation root.
--- failed re-building 'eudract.Rmd'

--- re-building 'standard_reporting.Rmd' using rmarkdown
--- finished re-building 'standard_reporting.Rmd'

SUMMARY: processing the following file failed:
  'eudract.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... [3s] OK
* DONE
Status: 3 ERRORs