* using log directory 'd:/Rcompile/CRANpkg/local/4.3/nlme.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'nlme/DESCRIPTION' ... OK * this is package 'nlme' version '3.1-166' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'nlme' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 12.3.0' * used Fortran compiler: 'GNU Fortran (GCC) 12.3.0' * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [46s] OK * checking Rd files ... [7s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking examples ... [70s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [66s] OK Processing 'extras.Rin' Running 'anova.gls.R' [1s] Running 'augPred_lab.R' [19s] Running 'augPredmissing.R' [1s] Running 'coef.R' [1s] Comparing 'coef.Rout' to 'coef.Rout.save' ... OK Running 'contrMat.R' [1s] Running 'corFactor.R' [0s] Running 'corStruct.R' [1s] Running 'data.frame.R' [0s] Running 'deparse.R' [1s] Running 'deviance.R' [1s] Running 'fitted.R' [1s] Running 'getData.R' [1s] Running 'getVarCov.R' [1s] Running 'gls.R' [1s] Running 'gnls-ch8.R' [1s] Running 'lmList.R' [1s] Running 'lme.R' [4s] Comparing 'lme.Rout' to 'lme.Rout.save' ... OK Running 'missing.R' [1s] Comparing 'missing.Rout' to 'missing.Rout.save' ... OK Running 'nlme.R' [2s] Running 'nlme2.R' [2s] Running 'predict.lme.R' [1s] Running 'scoping.R' [2s] Running 'sigma-fixed-etc.R' [18s] Running 'updateLme.R' [2s] Running 'varConstProp.R' [1s] Running 'varFixed.R' [1s] Running 'varIdent.R' [0s] * checking PDF version of manual ... [45s] OK * checking HTML version of manual ... [63s] OK * DONE Status: OK