* using log directory 'd:/Rcompile/CRANpkg/local/4.5/eudract.Rcheck' * using R Under development (unstable) (2024-12-21 r87453 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'eudract/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'eudract' version '1.0.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'eudract' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [2s] ERROR Running examples in 'eudract-Ex.R' failed The error most likely occurred in: > ### Name: clintrials_gov_convert > ### Title: applies a conversion using xslt from a simple xml file to a > ### ClinicalTrials.gov compatible file, and checks against the schema > ### Aliases: clintrials_gov_convert > > ### ** Examples > > safety_statistics <- safety_summary(safety, + exposed=c("Experimental"=60,"Control"=67)) > simple <- tempfile(fileext = ".xml") > eudract <- tempfile(fileext = ".xml") > ct <- tempfile(fileext = ".xml") > simple_safety_xml(safety_statistics, simple) 'D:\temp\2024_12_22_01_50_00_26287\Rtmpm2XOiO\file16aa47c923efe.xml' is created or modified > eudract_convert(input=simple, + output=eudract) 'D:\temp\2024_12_22_01_50_00_26287\Rtmpm2XOiO\file16aa43d37bb3.xml' is created or modified * checking for unstated dependencies in 'tests' ... OK * checking tests ... [3s] ERROR Running 'testthat.R' [2s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(eudract) > > test_check("eudract") * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [9s] ERROR Error(s) in re-building vignettes: --- re-building 'eudract.Rmd' using rmarkdown --- re-building 'standard_reporting.Rmd' using rmarkdown --- finished re-building 'standard_reporting.Rmd' SUMMARY: processing the following file failed: 'eudract.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [3s] OK * DONE Status: 3 ERRORs