* using log directory 'd:/Rcompile/CRANpkg/local/4.5/EMMIXgene.Rcheck'
* using R Under development (unstable) (2024-12-21 r87453 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'EMMIXgene/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EMMIXgene' version '0.1.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EMMIXgene' can be installed ... ERROR
Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.5/EMMIXgene.Rcheck/00install.out' for details.
* DONE
The installation logfile:
* installing *source* package 'EMMIXgene' ...
** package 'EMMIXgene' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2024_12_22_01_50_00_26287/RtmpQrKeAn/R.INSTALL2eab8329b1ee9/EMMIXgene/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/BH/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -DR_NO_REMAP -c emmix.cpp -o emmix.o
In file included from D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/RcppCommon.h:76,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
                 from D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include/RcppArmadillo.h:29,
                 from emmix.cpp:15:
emmix.cpp: In member function 'double df_eq_func::operator()(double)':
D:/RCompile/recent/R/include/Rmath.h:223:25: error: 'Rf_digamma' is not a member of 'boost::math'; did you mean 'digamma'?
  223 | #define digamma         Rf_digamma
      |                         ^~~~~~~~~~
emmix.cpp:35:33: note: in expansion of macro 'digamma'
   35 |     double temp = -boost::math::digamma(0.5*v) + std::log(0.5*v) + v_sum +
      |                                 ^~~~~~~
D:/RCompile/recent/R/include/Rmath.h:223:25: error: 'Rf_digamma' is not a member of 'boost::math'; did you mean 'digamma'?
  223 | #define digamma         Rf_digamma
      |                         ^~~~~~~~~~
emmix.cpp:36:22: note: in expansion of macro 'digamma'
   36 |         boost::math::digamma(0.5*(v+1.)) - std::log(0.5*(v+1.))+1.;
      |                      ^~~~~~~
emmix.cpp: In function 'Rcpp::List emmix_t(arma::vec, int, int, int, double, std::string)':
D:/RCompile/recent/R/include/Rmath.h:223:25: error: 'Rf_digamma' is not a member of 'boost::math'; did you mean 'digamma'?
  223 | #define digamma         Rf_digamma
      |                         ^~~~~~~~~~
emmix.cpp:344:138: note: in expansion of macro 'digamma'
  344 |               Q2(i) = -std::log(boost::math::tgamma(0.5*(nu.at(i))))  + 0.5*nu.at(i)*std::log(0.5*nu.at(i)) - 0.5*nu.at(i)*(boost::math::digamma(0.5*(nu.at(i)+1.0))-std::log(0.5*(nu.at(i)+1.0)) + arma::sum(arma::log(you.row(i))-you.row(i)));
      |                                                                                                                                          ^~~~~~~
make[1]: *** [D:/RCompile/recent/R/etc/x64/Makeconf:297: emmix.o] Error 1
make[1]: Leaving directory '/d/temp/2024_12_22_01_50_00_26287/RtmpQrKeAn/R.INSTALL2eab8329b1ee9/EMMIXgene/src'
ERROR: compilation failed for package 'EMMIXgene'
* removing 'd:/Rcompile/CRANpkg/lib/4.5/EMMIXgene'
* restoring previous 'd:/Rcompile/CRANpkg/lib/4.5/EMMIXgene'