* using log directory 'd:/Rcompile/CRANpkg/local/4.3/qtl2fst.Rcheck'
* using R version 4.3.3 (2024-02-29 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'qtl2fst/DESCRIPTION' ... OK
* this is package 'qtl2fst' version '0.28'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'qtl2fst' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s] OK
* checking loading without being on the library search path ... [2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [6s] ERROR
Running examples in 'qtl2fst-Ex.R' failed
The error most likely occurred in:

> ### Name: replace_path
> ### Title: Replace the path used in fst_genoprob object
> ### Aliases: replace_path
> 
> ### ** Examples
> 
> library(qtl2)
> grav2 <- read_cross2(system.file("extdata", "grav2.zip", package="qtl2"))
> probs <- calc_genoprob(grav2, error_prob=0.002)
> dir <- tempdir()
> fprobs <- fst_genoprob(probs, "grav2", dir, overwrite=TRUE)
writing D:\temp\2024_11_18_01_50_01_1577\RtmpEjBEWJ/grav2_1.fst
writing D:\temp\2024_11_18_01_50_01_1577\RtmpEjBEWJ/grav2_2.fst
writing D:\temp\2024_11_18_01_50_01_1577\RtmpEjBEWJ/grav2_3.fst
writing D:\temp\2024_11_18_01_50_01_1577\RtmpEjBEWJ/grav2_4.fst
writing D:\temp\2024_11_18_01_50_01_1577\RtmpEjBEWJ/grav2_5.fst
> 
> # move the probabilities into a different directory
> new_dir <- file.path(tempdir(), "subdir")
> if(!dir.exists(new_dir)) dir.create(new_dir)
> for(file in fst_files(fprobs)) {
+    file.rename(file, file.path(new_dir, basename(file)))
+ }
> 
> # revise the path in fprobs
> new_path <- sub(dir, new_dir, fst_path(fprobs))
Warning in sub(dir, new_dir, fst_path(fprobs)) :
  TRE pattern compilation error 'Invalid back reference'
Error in sub(dir, new_dir, fst_path(fprobs)) : 
  invalid regular expression 'D:\temp\2024_11_18_01_50_01_1577\RtmpEjBEWJ', reason 'Invalid back reference'
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [28s] OK
  Running 'testthat.R' [28s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [5s] OK
* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... [2s] OK
* DONE
Status: 1 ERROR